The Goode Lab at Brandeis University
Coordination of microtubule and actin polymer dynamics
Actin filament disassembly & remodeling
Cellular actin assembly mechanisms
Research in the Goode lab focuses on defining the biochemical and cellular mechanisms of actin and microtubule cytoskeleton rearrangements that drive cell morphogenesis, motility, endocytosis, and intracellular transport. To tackle these problems, we take a multi-disciplinary ‘top down’ and ‘bottom up’ approach, combining forward and reverse genetics, biochemistry, structural biology, cell imaging, and multi-wavelength single molecule TIRF microscopy. From 2000-2010, our primary in vivo discovery system was the budding yeast S. cerevisiae; however, since then we have made a major transition, and about half of the lab currently studies cytoskeletal dynamics in mammalian cells.
Our long-range goal is to define in molecular detail the multi-component mechanisms that underlie these critical steps in cytoskeletal remodeling, which govern cell shape, organization, and dynamics.
1. Microtubule-Actin cross-regulation
Historically the microtubule and actin cytoskeletons have been studied separately. However, ultrastructural, pharmacological, and genetic evidence dating back decades has suggested that tight coordination between the microtubule and actin polymer networks is required for such fundamental processes as directed cell migration, cell division, and phagocytosis. In many of these biological settings, the growth of microtubule plus-ends into actin-rich cortical regions triggers changes in actin assembly-based functions, including focal adhesion turnover, filopodial extension, lamellipodia protrusion, neurite outgrowth, and phagocytic cup formation. We are studying the molecular mechanisms of microtubule-actin crosstalk underlying these processes, with particular focus on the roles of CLIP-170, formins, APC, EB1, IQGAP, and more.
Ultrafast assembly of actin (blue) from the growing plus end microtubule (magenta), mediated by CLIP-170, EB1, and Formin (yellow).
Co-reconstitution and simultaneous TIRF imaging of growing actin filaments (green) and microtubules undergoing dynamic instability (red).
Branched actin network assembly at leading edge in WT B16 melanoma cell
N2A cell expressing mCherry-CLIP-170 (magenta) and GFP-actin (yellow).
Rat cortical neuron expressing GFP.
2. Actin Disassembly and Remodeling
We have great interest in how cellular actin structures vary in their sizes, shapes, and turnover dynamics. The dynamics of each structure appear to be tailored to their biological functions. We are studying how this is achieved by cells using a core set of conserved actin disassembly-promoting factors including Cofilin, Coronin, Aip1, Srv2/CAP, Abp1, GMF, and Twinfilin. Recent results from our lab have demonstrated that many of these factors combine to work in complex multi-component mechanisms. This has included mechanisms of filament debranching, enhanced severing, and filament end-depolymerization, and how these mechanisms drive the rearrangement of entire actin filament networks with different geometries.
Severing of filaments by cofilin (red arrows) and rapid end-depolymerization by Twinfilin and Srv2/CAP (yellow+blue arrows).
Novel actin network remodeling activity by a combination of actin-binding proteins.
Remodeling of a branched actin network comprised of red and green filaments.
GMF-induced debranching of Arp2/3-generated branched actin network.
3. Cellular Actin Assembly Mechanisms
Cells rely on the precisely tuned activities of multiple actin assembly-promoting factors to generate diverse actin structures. These include the Arp2/3 complex, Formins, and APC. We are studying how the potent activities of these actin nucleation and elongation factors are spatially and temporary controlled in cells through interactions with a variety of binding partners. For the Arp2/3 complex, this includes WASp, WAVE, Coronin, GMF, and Abp1. For Formins, this includes Bud6, Bud14, Smy1, Hof1, APC, CLIP-170, Spire, and Capping Protein. We are studying these mechanisms by multi-wavelength single-molecule analysis in vitro and by complimentary in vivo experiments using genetics and live-cell imaging.
Collaborative "rocket launcher" mechanism of actin assembly by APC (blue) and formin (red). Left: TIRFM movie. Right: animation.
Dynamic actin cables labeled with Abp140-GFP in a budding yeast imaged on a spinning disk confocal microscope.
Illustration of different formin-interacting proteins and their regulatory effects.